Pipeline

MetaPhlAn3, taxonomĆ­a

Con todas las muestras comparando NASH vs Control

Barplots

LEfSe

Con todas las muestras comparando NASH vs Control estratificando por gƩnero (Male)

Barplots

LEfSe

Con todas las muestras comparando NASH vs Control estratificando por gƩnero (Female)

Barplots

LEfSe

Con todas las muestras comparando NASH vs Control no NAFL vs NAFL

Barplots

LEfSe

Con todas las muestras comparando NASH vs Control no NAFL vs NAFL estratificando por gƩnero (Male)

Barplots

LEfSe

Con todas las muestras comparando NASH vs Control no NAFL vs NAFL estratificando por gƩnero (Female)

Barplots

LEfSe

MetaPhlAn3, diversidad alfa

Con todas las muestras comparando NASH vs Control

## Warning in wilcox.test.default(c(118, 50, 66, 65, 60, 79, 50, 61, 85, 60, :
## cannot compute exact p-value with ties
## Warning in wilcox.test.default(c(125.090909090909, 50, 66, 65.5, 60, 84, :
## cannot compute exact p-value with ties

Con todas las muestras comparando NASH vs Control estratificando por gƩnero (Male)

## Warning in wilcox.test.default(c(49, 61, 61), c(51, 29, 39, 48, 40), paired =
## FALSE): cannot compute exact p-value with ties

## Warning in wilcox.test.default(c(49, 61, 61), c(51, 29, 39, 48, 40), paired =
## FALSE): cannot compute exact p-value with ties

Con todas las muestras comparando NASH vs Control estratificando por gƩnero (Female)

## Warning in wilcox.test.default(c(118, 50, 66, 60, 75, 86, 88, 49, 43, 46, :
## cannot compute exact p-value with ties
## Warning in wilcox.test.default(c(125.090909090909, 50, 66, 60, 75, 86, 88, :
## cannot compute exact p-value with ties

Con todas las muestras comparando NASH vs Control no-NAFL vs NAFL

## Warning in wilcox.test.default(c(118, 50, 60, 75, 86, 61, 88, 61, 50, 43: cannot
## compute exact p-value with ties
## Warning in wilcox.test.default(c(79, 66, 57, 65, 62, 51, 69, 54, 29, 45, :
## cannot compute exact p-value with ties
## Warning in wilcox.test.default(c(79, 66, 57, 65, 62, 51, 69, 54, 29, 45, :
## cannot compute exact p-value with ties
## Warning in wilcox.test.default(c(125.090909090909, 50, 60, 75, 87.5, 61, :
## cannot compute exact p-value with ties
## Warning in wilcox.test.default(c(79.1666666666667, 66, 57, 65, 62, 51, 69.25, :
## cannot compute exact p-value with ties
## Warning in wilcox.test.default(c(79.1666666666667, 66, 57, 65, 62, 51, 69.25, :
## cannot compute exact p-value with ties

Con todas las muestras comparando NASH vs Control no-NAFL vs NAFL estratificando por gƩnero (Male)

## Warning in wilcox.test.default(c(61, 61), 49, paired = FALSE): cannot compute
## exact p-value with ties
## Warning in wilcox.test.default(c(51, 29, 39, 48, 40), c(61, 61), paired =
## FALSE): cannot compute exact p-value with ties
## Warning in wilcox.test.default(c(61, 61), 49, paired = FALSE): cannot compute
## exact p-value with ties
## Warning in wilcox.test.default(c(51, 29, 39, 48, 40), c(61, 61), paired =
## FALSE): cannot compute exact p-value with ties

Con todas las muestras comparando NASH vs Control no-NAFL vs NAFL estratificando por gƩnero (Female)

## Warning in wilcox.test.default(c(118, 50, 60, 75, 86, 88, 49, 43), c(66, :
## cannot compute exact p-value with ties
## Warning in wilcox.test.default(c(77, 64, 58, 65, 62, 67, 53, 45, 45, 39, :
## cannot compute exact p-value with ties
## Warning in wilcox.test.default(c(77, 64, 58, 65, 62, 67, 53, 45, 45, 39, :
## cannot compute exact p-value with ties
## Warning in wilcox.test.default(c(125.090909090909, 50, 60, 75, 86, 88, 49, :
## cannot compute exact p-value with ties
## Warning in wilcox.test.default(c(78.5, 64, 58, 65, 62, 68, 53, 45, 45, 39, :
## cannot compute exact p-value with ties
## Warning in wilcox.test.default(c(78.5, 64, 58, 65, 62, 68, 53, 45, 45, 39, :
## cannot compute exact p-value with ties

MetaPhlAn3, diversidad beta

Con todas las muestras comparando NASH vs Control

Con todas las muestras comparando NASH vs Control contrastando gƩneros

Con todas las muestras comparando NASH vs Control estratificando por gƩnero (Male)

Con todas las muestras comparando NASH vs Control estratificando por gƩnero (Female)

Con todas las muestras comparando NASH vs Control no-NAFL vs NAFL

Con todas las muestras comparando NASH vs Control no-NAFL vs NAFL contrastando gƩneros

Con todas las muestras comparando NASH vs Control no-NAFL vs NAFL estratificando por gƩnero (Male)

Con todas las muestras comparando NASH vs Control no-NAFL vs NAFLestratificando por gƩnero (Female)